Pairwise Alignments

Query, 525 a.a., lipid II flippase MurJ from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., Proposed peptidoglycan lipid II flippase MurJ from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  414 bits (1065), Expect = e-120
 Identities = 214/520 (41%), Positives = 322/520 (61%), Gaps = 7/520 (1%)

Query: 5   TVSKRLLKSGIIVSAMTLISRVLGLVRDVVVANLMGAGASADVFFFANRIPNFLRRLFAE 64
           T    LLKS   VS+MT+ SRVLG  RD +VA + GAG + D FF A ++PN LRR+FAE
Sbjct: 11  TKEMNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAFKLPNLLRRIFAE 70

Query: 65  GAFSQAFVPVLTEYHASGDINKTRDLIARASGTLGVLVTIVTLIGVLGSGAVTALFGAGW 124
           GAFSQAFVP+L EY +      TR  +A  SG L + + +VT+ G+L +  V  +   G+
Sbjct: 71  GAFSQAFVPILAEYKSKQGEEATRIFVAYVSGLLTLALAVVTVAGMLAAPWVIMVTAPGF 130

Query: 125 FLDWLNGGPAAGKFELASLLLKITFPYLWFITFVALSGAILNTLGKFAVSSFTPVFLNVM 184
                     A KF L + LL+ITFPY+  I+  +L GAILNT  +F++ +F P FLN+ 
Sbjct: 131 -------ADTADKFALTTQLLRITFPYILLISLASLVGAILNTWNRFSIPAFAPTFLNIS 183

Query: 185 MILCAWYLSPNLEQPEVGLAIGVFLGGLVQFLFQLPFLIKAGVLVRPKWGWKDPGVVKIR 244
           MI  A + +P    P + LA  V +GG++Q ++QLP+L K G+LV P+  ++D G +++ 
Sbjct: 184 MIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPYLKKIGMLVLPRINFRDTGAMRVV 243

Query: 245 TLMIPALFGVSVSQINLLFDSFVASFLQTGSISWLYYSDRLLEFPLGLFGIAIATVILPA 304
             M PA+ GVSVSQI+L+ ++  ASFL +GS+SW+YY+DRL+EFP G+ G+A+ T++LP+
Sbjct: 244 KQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPS 303

Query: 305 LSRKHVDAHSDGFAHTMDWGIRMVTFLGIPAMLGLMVLAKPMLMVLFMRGEFTPSDVEQA 364
           LS+     + D +   MDWG+R+   L +P+ + L +LAKP+ + LF  G+FT  D    
Sbjct: 304 LSKSFASGNHDEYCRLMDWGLRLCFLLALPSAVALGILAKPLTVSLFQYGKFTAFDAAMT 363

Query: 365 SYSLLAYSSGLLSFMLIKVLAPGYYSRQDTKTPVRYGIIAMVSNIVLNAIFAWFYGYVGL 424
             +L+AYS GL+  +++KVLAPG+YSRQD KTPV+  I+ ++   ++N  F     + GL
Sbjct: 364 QRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLIMTQLMNLAFIGPLKHAGL 423

Query: 425 AVATSMSAFLNMALLYRGLHLQGVYHLTRKTVWFVARLAMAGAVMTGALLWQLDTMATWL 484
           +++  ++A LN +LLY  L  Q ++      +WF+ RL ++  VM   L   L  M  W 
Sbjct: 424 SLSIGLAACLNASLLYWQLRKQNIFTPQPGWMWFLMRLIISVLVMAAVLFGVLHIMPEWS 483

Query: 485 SWGISQRALTLTGLIGLGVASYLAILLLLGVRLKDLKAAT 524
              +  R L L  ++  G+A+Y A L +LG ++K+    T
Sbjct: 484 QGSMLWRLLRLMAVVIAGIAAYFAALAVLGFKVKEFVRRT 523