Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  199 bits (506), Expect = 6e-56
 Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 5/296 (1%)

Query: 4   LNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTEL 63
           LNY  L+YFW+V K GS+ +A + L LTPQT++GQI  LE      L +R GR +E TE 
Sbjct: 2   LNYRQLHYFWVVAKTGSIVRACEQLNLTPQTISGQISLLEQTFGIALFQRVGRQLELTEA 61

Query: 64  GQLVFKYADRMFGLSYEMLDIVN-YSQRSNLLFDVGVADALSKRLVSKILLTSVPGDNRI 122
           G+    YA++MF    E+  ++        +LF VGVAD + K +V +++  ++     I
Sbjct: 62  GRQALPYAEQMFQTGNELEAMLRAQPNEQQILFRVGVADVVPKSIVYRLIAPTMELSEAI 121

Query: 123 HLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFF---SFGDVD 179
            + C E   E LL  LA  +LD+++SD P+ +      +S+KLGE  +SFF   +  D  
Sbjct: 122 RITCREDKLERLLADLAIQRLDLVISDSPMPTHLDIKGYSQKLGECGISFFATQALADTY 181

Query: 180 FAPFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAV 239
              FP  L    LL+PG+ T +  ++++WF  Q +QP I+GEFDDSALM+AF       +
Sbjct: 182 GGDFPQCLHGAPLLIPGAETVVRSRLQRWFAEQQIQPKIIGEFDDSALMQAFG-QSGSGI 240

Query: 240 FMAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           F+APS    EV  +  + LIG    + E +Y I  ER ++HP +  + +     LF
Sbjct: 241 FIAPSVIADEVVRQYGVALIGQTVAVTESFYAISVERKVKHPGIVAITEGARRELF 296