Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

 Score =  208 bits (530), Expect = 1e-58
 Identities = 112/295 (37%), Positives = 169/295 (57%), Gaps = 4/295 (1%)

Query: 4   LNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTEL 63
           LNY  L+YFW V K GS+T+A+  L LTPQT++GQI   E     +L +R GR +E TE 
Sbjct: 2   LNYRQLHYFWAVAKTGSITRASQQLNLTPQTISGQITLFEQTYGLELFQRAGRQLELTET 61

Query: 64  GQLVFKYADRMFGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDNRIH 123
           G+    YA++MF +  E+  ++    +  +LF VGVAD + K +V ++L  ++  +  + 
Sbjct: 62  GRQALVYAEQMFQIGSELEAMLRAGPQEQILFRVGVADVVPKSIVYRLLAPTMDLEEVLR 121

Query: 124 LRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFF---SFGDVDF 180
           + C E   E LL  LA  +LD+++SD P+ +      +S+KLGE  +SFF   +      
Sbjct: 122 INCREDKLERLLADLAIQRLDLVISDSPMPNHLDIKCYSQKLGECGLSFFATPALAQRLE 181

Query: 181 APFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAVF 240
            PFPA LQ   LLVPG  T +  ++ +W   Q +QP I+GEFDDSALM+AF       +F
Sbjct: 182 GPFPACLQDAPLLVPGQETVVRSRLLRWLGEQQVQPRIVGEFDDSALMQAFG-QSGSGIF 240

Query: 241 MAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           +APS    EV  +  ++LIG  + + E +Y I  ER ++HP +  + +     LF
Sbjct: 241 VAPSVIAEEVCRQYGVQLIGQTEAVHESFYAISVERKVKHPGIVAITEGARRELF 295