Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., Cys regulon transcriptional activator CysB from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  158 bits (399), Expect = 2e-43
 Identities = 97/292 (33%), Positives = 159/292 (54%), Gaps = 10/292 (3%)

Query: 4   LNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTEL 63
           LNY HLYYFW+  K+G ++ AA  L +  QTV+ Q++ LE  L   L K  GR +  TE 
Sbjct: 5   LNYRHLYYFWVTAKEGGMSHAAARLGMAVQTVSAQVRQLEQALGHALFKPAGRGLALTEA 64

Query: 64  GQLVFKYADRMFGLSYEMLDIVNYS---QRSNLLFDVGVADALSKRLVSKILLTSVPGDN 120
           GQ     A+++F L  ++   V+ +   QR  L+  VG++D L K L  + LL  V  + 
Sbjct: 65  GQAALALAEQIFSLGEQLRGAVSDAAGGQRVRLV--VGISDGLPK-LAVRELLAPVLTEA 121

Query: 121 RIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFF---SFGD 177
            + L C E + + LL  LA H+LD++LSD P  ++ +  L+S  LG S + ++   ++ D
Sbjct: 122 NLRLLCHEDSFDDLLAALALHRLDVVLSDRPAPANPNLKLYSHALGSSPLGWYAPPAWLD 181

Query: 178 VDFAPFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSD 237
                FP  L    +L+P +++++  ++ QWF+RQ + P ++GEF+DSAL+  F      
Sbjct: 182 AARRDFPRCLSQVPVLLPTAQSSVRLRIDQWFERQRVVPRVVGEFEDSALLATFGA-SGM 240

Query: 238 AVFMAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDA 289
            V  A      ++     L+ +G  + ++E +Y I   R +QHP V+ +  A
Sbjct: 241 GVLPAAERMREQLAQAYGLRGVGPCEGVQEHFYAIGTARKVQHPLVQRLLSA 292