Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., Transcriptional activator NhaR from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  392 bits (1007), Expect = e-114
 Identities = 194/295 (65%), Positives = 236/295 (80%), Gaps = 1/295 (0%)

Query: 1   MSHLNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEP 60
           MSH+NYNHLYYFW V K+GSV  AA+ALFLTPQT+TGQIKALE+RL GKL KR GR +EP
Sbjct: 3   MSHINYNHLYYFWHVYKEGSVVGAAEALFLTPQTITGQIKALEERLQGKLFKRKGRGLEP 62

Query: 61  TELGQLVFKYADRMFGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDN 120
           +ELG+LVF+YAD+MF LS EMLDIVNY + SNLLFDVGVADALSKRLVS +L  +V  D 
Sbjct: 63  SELGELVFRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKRLVSSVLDAAVVVDE 122

Query: 121 RIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDF 180
            IHLRCFESTHEMLLEQL+QHKLDMI+SDCP+DS+Q  GLFS K+GE  +SF+    +  
Sbjct: 123 PIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVKIGECSVSFWCTNPLPE 182

Query: 181 APFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAVF 240
             FPA L+ ++LLVPG R+ +GRK+  WF+ QGLQ  ILGEFDD+ALMKAF   H DA+F
Sbjct: 183 KAFPACLEERRLLVPGRRSMLGRKLLNWFNSQGLQVEILGEFDDAALMKAFGATH-DAIF 241

Query: 241 MAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           +APS Y  +  A+ S+  IG V+ + EEY+ IFAERMIQHPAV+ +C+AD++ LF
Sbjct: 242 VAPSLYSLDFYADESVIEIGRVENVMEEYHAIFAERMIQHPAVQRICNADYSALF 296