Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) from Escherichia coli BW25113

 Score = 66.6 bits (161), Expect = 7e-16
 Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 16/235 (6%)

Query: 4   LNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTEL 63
           +N+  L YF  +   GS+T+AA+ L +    ++ Q+  LE  L+ +L  R  R + PT+ 
Sbjct: 1   MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDA 60

Query: 64  GQLVFKYADRMF-GLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGD-NR 121
           G++++ +A  +        L + N  Q  +    +G A   +   ++  LL +V  +   
Sbjct: 61  GKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPE 120

Query: 122 IHLRCFESTHEMLLEQLAQHKLDM--ILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVD 179
           I +   E++  +L E+L  H+LDM  I    PV    S  L  + L       F  G  D
Sbjct: 121 IVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDL-------FLVGTQD 173

Query: 180 FAPFPAV----LQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKA 230
             P  +V    +    L +P   +A+  +V + F  + L   ++GE +  A + A
Sbjct: 174 -CPGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGEIESIATLTA 227