Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., transcriptional activator NhaR from Escherichia coli ECRC62

 Score =  380 bits (977), Expect = e-110
 Identities = 184/295 (62%), Positives = 233/295 (78%), Gaps = 1/295 (0%)

Query: 1   MSHLNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEP 60
           MSH+NYNHLYYFW V K+GSV  AA+AL+LTPQT+TGQI+ALE+RL GKL KR GR +EP
Sbjct: 1   MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEP 60

Query: 61  TELGQLVFKYADRMFGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDN 120
           +ELG+LV++YAD+MF LS EMLDIVNY + SNLLFDVGVADALSKRLVS +L  +V    
Sbjct: 61  SELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKRLVSSVLNAAVVEGE 120

Query: 121 RIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDF 180
            IHLRCFESTHEMLLEQL+QHKLDMI+SDCP+DS+Q  GLFS ++GE  +SF+       
Sbjct: 121 PIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPE 180

Query: 181 APFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAVF 240
            PFPA L+ ++LL+PG R+ +GRK+  WF+ QGL   ILGEFDD+ALMKAF   H +A+F
Sbjct: 181 KPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMH-NAIF 239

Query: 241 MAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           +AP+ Y  +  A+ ++  IG V+ + EEY+ IFAERMIQHPAV+ +C+ D++ LF
Sbjct: 240 VAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALF 294