Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., transcriptional regulator CynR from Escherichia coli ECRC101

 Score = 54.3 bits (129), Expect = 3e-12
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 12/221 (5%)

Query: 8   HLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTELGQLV 67
           H+ YF  V + GS T+AA AL ++   ++ QI+ LE+ L   L  R+GR+I  T+ G++ 
Sbjct: 5   HINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIHLTDAGEVW 64

Query: 68  FKYADRM---FGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDNRIHL 124
            +YA R     G     +  V    R +L   + V    +   +  ++         I L
Sbjct: 65  RQYASRALQELGAGKRAIHDVADLTRGSL--RIAVTPTFTSYFIGPLMADFYARYPGITL 122

Query: 125 RCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDFAPFP 184
           +  E + E + + L + +LD+ ++  PV     P L +  L    ++         A   
Sbjct: 123 QLQEMSQEKIEDLLCRDELDVGIAFAPV---HLPELEAIPLLTESLALVVAQHHPLAACE 179

Query: 185 AV----LQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGE 221
            V    L  +KL++  +  A   ++  + ++ GL P ++ E
Sbjct: 180 QVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIE 220