Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., transcriptional regulator CynR from Escherichia coli ECOR27

 Score = 57.0 bits (136), Expect = 5e-13
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 12/221 (5%)

Query: 8   HLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTELGQLV 67
           H+ YF  V + GS T+AA AL ++   ++ QI+ LE+ L   L  R+GR+I  T+ G++ 
Sbjct: 5   HINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVW 64

Query: 68  FKYADRM---FGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDNRIHL 124
            +YA R     G     +  V    R +L   + V    +   +  ++         I L
Sbjct: 65  RQYASRALHELGAGKRAIHDVAALTRGSL--RIAVTPTFTSYFIGPLMADFYARYPGITL 122

Query: 125 RCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDFAPFP 184
           +  E + E + + L + +LD+ ++  PV    SP L +  L    ++         A   
Sbjct: 123 QLQEMSQEKIEDLLCRDELDVGIAFAPV---HSPELEAIPLLTESLALVVAQHHPLAACE 179

Query: 185 AV----LQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGE 221
            V    L  +KL++  +  A   ++  + ++ GL P ++ E
Sbjct: 180 QVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIE 220