Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 6/261 (2%)

Query: 4   LNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTEL 63
           + + HL  F  V +Q SV +AA+ L ++   VT  I+ LED L   L +R GR I  +  
Sbjct: 6   IKFRHLQTFVEVARQKSVIRAAEILHVSQPAVTKTIRELEDVLGVSLLEREGRGIRISRY 65

Query: 64  GQLVFKYADRMFGLSYEMLDIVNY-SQRSNLLFDVGVADALSKRLVSKILLTSVPGDNRI 122
           G++  ++A        + +D V+  + R+     VG    +S R++ K +   +      
Sbjct: 66  GEVFLRHAGATMTALRQAVDSVSQEAARAGPPVRVGALPTVSVRIMPKAMSGFLAEKTGS 125

Query: 123 HLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDFAP 182
            ++     + +LLEQL    LD+++         +   F     E        G    +P
Sbjct: 126 PVKIVTGENAVLLEQLRVGDLDLVVGRLAAPQKMAGFSFEHLYSEKVRFVVRAGHPLLSP 185

Query: 183 FPAV---LQSKKLLVPGSRTAMGRKVRQWFDRQGLQP-HILGEFDDSALMKAFAIYHSDA 238
             +V   L    +L+P  ++ +G  V Q+    G+    I  E    A  +AF +  SDA
Sbjct: 186 GLSVFDHLHEYPVLMPTRQSVIGPVVEQFLIANGVPALPIRIETVSDAFGRAF-LRTSDA 244

Query: 239 VFMAPSFYVSEVDAESSLKLI 259
           +++     V+   A+  L ++
Sbjct: 245 IWIISEGVVAADVADGILAIL 265