Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  184 bits (468), Expect = 4e-51
 Identities = 125/355 (35%), Positives = 190/355 (53%), Gaps = 33/355 (9%)

Query: 106 DFFTAPIPDAQLLSTIGHQLGMLKLE------KKVWPHFGSAGNMGLIGESMPMKRLRDQ 159
           DF   P    +L+      L  L+L+      K++ PH    G + LIG S  +++L+  
Sbjct: 101 DFIEKPFNADRLVMVTERALETLRLKRELKELKQLTPH----GRI-LIGRSSAIQQLKGT 155

Query: 160 IKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGL- 218
           I+R+GPT+  ILI G SG+GKE  A+ IH  S RAQ PF+ +N  AM+ +RLE ELFG+ 
Sbjct: 156 IERVGPTNSRILIVGPSGSGKELTARLIHSVSGRAQGPFVVLNSAAMTPERLEFELFGVA 215

Query: 219 -GETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVETRQGVR---AVDVR 274
            GE  E ++  L +A GGTL L++I  +P+  Q  +LR L E T  TR G      VDVR
Sbjct: 216 EGEGREQKRGALEEAHGGTLFLDEIADMPRETQNRVLRVLVEQTF-TRVGSNDKVTVDVR 274

Query: 275 ILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNA 334
           I+++   ++E+ +  G F E+LYH ++V+ I VP L ER  DI  L   FL   S+    
Sbjct: 275 IISSTGRNLEEEIAKGRFREDLYHRLSVVPIRVPPLAERREDIPDLVDFFLDSISQTTGL 334

Query: 335 QARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMS---DTVVLDESQL---------DL 382
             R   +DA+  L  + WPGNVR+L N ++R+++++       +  + L          L
Sbjct: 335 PRRPIGEDAMAVLQSHDWPGNVRQLRNNVERLLILAGGDPEATITAAMLPPDVGALVPTL 394

Query: 383 PKRSDGRR----SLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLL 433
           P  + G       L+  RE  ER+ L   +    G +S  A+ +G+ R+ ++R L
Sbjct: 395 PNGNGGEHLMGLPLREAREVFEREYLAAQINRFGGNISRTAEFVGMERSALHRKL 449