Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  191 bits (486), Expect = 3e-53
 Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 25/316 (7%)

Query: 140 SAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFI 199
           S G +G+IG   PM+ L  +I+++ PTD ++LI GESGTGKE VA+A+H  S RA+ P I
Sbjct: 141 SNGEIGIIGSCPPMQDLYGKIRKVAPTDSNVLIQGESGTGKELVARALHNLSKRAKAPMI 200

Query: 200 SVNCRAMSEKRLESELFG-----LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLL 254
           SVNC A+ E  +ESELFG           G+   +  ADGGTL L++I  LP   Q  LL
Sbjct: 201 SVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEIGELPLEAQARLL 260

Query: 255 RFLQEGTVETRQGVRA--VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKE 312
           R LQEG +     V++  VDVR++AA   D++     G F E+LY+ ++V+ + +P+L+E
Sbjct: 261 RVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQFREDLYYRLHVIALKLPALRE 320

Query: 313 RASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDT 372
           R +D+  +A  FL   S   N     F+ DA + +  Y WPGNVREL N ++R V++S++
Sbjct: 321 RGADVNEIAHAFLLRQSARINRTDLKFAPDAEQAIRHYSWPGNVRELENAVERAVILSES 380

Query: 373 VVLDESQLDL----------------PKRSDGRRSLKSIRERSERDALL-LVLESHSGQV 415
             +    L +                P +     S +   + S  D     VLE      
Sbjct: 381 PEISAELLGIDIELSDLEDDDFIGLAPSQGGSNTSHEPTEDLSLEDYFQHFVLEHQDHMT 440

Query: 416 ST-AAKELGVSRATMY 430
            T  A++LGVSR  ++
Sbjct: 441 ETELARKLGVSRKCLW 456