Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., transcriptional regulator from Pseudomonas simiae WCS417

 Score =  186 bits (472), Expect = 1e-51
 Identities = 119/346 (34%), Positives = 184/346 (53%), Gaps = 29/346 (8%)

Query: 121 IGHQLGMLKLEKKVWPHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGK 180
           +  ++  L L  +++       +  +IG+S P KRL ++IK +G +D+++LI GE+G GK
Sbjct: 162 VAERIERLTLRAEIYREASGQQHKEMIGQSKPHKRLVEEIKLVGGSDLTVLITGETGVGK 221

Query: 181 ETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFG------LGETEEGQQPFLLQADG 234
           E VA+AIH  S+RA KP IS+NC A+ E  +ESELFG       G   E +  F L A+G
Sbjct: 222 ELVAQAIHAASTRADKPLISLNCAALPETLVESELFGHVRGAFTGALNERRGKFEL-ANG 280

Query: 235 GTLLLNDILTLPKSQQLNLLRFLQEGTVET--RQGVRAVDVRILAANSSDIEKALIDGDF 292
           GTL L+++  L  + Q  LLR LQ G ++         VDVR++AA + D+   + +G +
Sbjct: 281 GTLFLDEVGELSLTVQAKLLRVLQSGQLQRLGSDKEHQVDVRLIAATNRDLADEVRNGRY 340

Query: 293 NEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHW 352
             + YH ++V  + VP+L+ER  D++LLA  FL++        +   + DA   L  Y+W
Sbjct: 341 RADFYHRLSVYPLQVPALRERGRDVLLLAGFFLEQNRSRMGLGSLRLTSDAQAALLAYNW 400

Query: 353 PGNVRELMNQIKRVVLMS--------DTVVLDESQLDLPKRSDG------------RRSL 392
           PGNVREL + I R  L +          + L+   LDLP  S                 L
Sbjct: 401 PGNVRELEHLIGRSALKALGNCRERPKILSLNAQDLDLPDVSAPLIEEQTGSAPVVTGDL 460

Query: 393 KSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNKHNL 438
           +   E+ +R  +   LE H    ++AA+ELG+ RA + R+  +  L
Sbjct: 461 RQATEQYQRQVISACLERHQHNWASAARELGLDRANLGRMAKRLGL 506