Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  254 bits (650), Expect = 3e-72
 Identities = 148/373 (39%), Positives = 221/373 (59%), Gaps = 11/373 (2%)

Query: 76  SHKQVRWLAFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVW 135
           S     W+A + +  L    +  F+  +  DF T P   A++  T+G   GM +L  K +
Sbjct: 69  SRSGTEWIAVLSQDVLRLQNVGDFVCEWFFDFHTLPFDVARVQVTLGRAFGMARLRGKGY 128

Query: 136 PHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQ 195
                  +  L+G+S P++ LR  + ++ PT+  +LI G+SGTGKE VAK +H+ S R  
Sbjct: 129 TAVDEPEHE-LLGDSRPIRELRKLLSKLAPTESPVLIRGDSGTGKELVAKTLHRQSQRHA 187

Query: 196 KPFISVNCRAMSEKRLESELFGLGE---TEEGQQPF--LLQADGGTLLLNDILTLPKSQQ 250
           KPF+++NC A+ E  ++SELFG  +   T   Q+    +  A+GGTL L++I  LP   Q
Sbjct: 188 KPFVAINCGAIPEHLIQSELFGHEKGAFTGAHQRKIGRIEAANGGTLFLDEIGDLPMELQ 247

Query: 251 LNLLRFLQEGTVETRQGVRA--VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVP 308
            NLLRFLQE  +E   G +   VDVR+LAA   D+E A+  G F E+LY+ +NVL++   
Sbjct: 248 ANLLRFLQEKQIERVGGSQPIPVDVRVLAATHVDLEAAVEKGTFREDLYYRLNVLQVVTA 307

Query: 309 SLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVL 368
            L+ER  DI +LA HF + YS+E   + RSFSDDA+  +  + WPGNVREL N+++R ++
Sbjct: 308 PLRERHGDIAMLANHFSRFYSQETGRRPRSFSDDALVAMGEHAWPGNVRELANRVRRGLV 367

Query: 369 MSDTVVLDESQLDLPKR---SDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVS 425
           +++   ++   L L  +   S    +L+  + R+ER AL  VL  HS  +S AA+ LGVS
Sbjct: 368 LAEGRQIEAVDLGLQGQQAISPPMATLEDYKHRAERQALCDVLNRHSDNLSVAARVLGVS 427

Query: 426 RATMYRLLNKHNL 438
           R T YRLL+KH +
Sbjct: 428 RPTFYRLLHKHQI 440