Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  184 bits (468), Expect = 6e-51
 Identities = 111/289 (38%), Positives = 165/289 (57%), Gaps = 19/289 (6%)

Query: 166 TDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFG------LG 219
           +D + LI GESGTGKE  A+AIH  S R   PF++VNC A+    ++SELFG       G
Sbjct: 360 SDSTTLILGESGTGKELFAQAIHNGSDRCNGPFVAVNCGAIPRDLVQSELFGHVEGAFTG 419

Query: 220 ETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVETRQGV---RAVDVRIL 276
               G       ADGGT+ L++I  +    Q++LLR LQEG + TR G    R VDVRI+
Sbjct: 420 SARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEI-TRVGAKNSRQVDVRII 478

Query: 277 AANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNAQA 336
           AA   ++ +A+  G F E+LY+ +NVL + VP L+ R  DI LLA+HFL   ++      
Sbjct: 479 AATHRNLSQAVAQGAFREDLYYRLNVLNLTVPPLRMRREDIPLLARHFLARCARSLRKSV 538

Query: 337 RSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDESQLDLPKRSDGRRSLKSIR 396
           + FS +A+  L+ Y WPGNVREL N I+R   ++   +++   +DLP  +  R  L++  
Sbjct: 539 QGFSPEAMALLSAYGWPGNVRELENSIERATNLAMGALIE--PVDLPLENRQRAPLRAYE 596

Query: 397 ERS-------ERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNKHNL 438
            ++       ER A++  L +  G +  AA++L VSR  +Y  +++  L
Sbjct: 597 PQAAQDLSSHERHAIVAALTNTGGNIRLAARQLNVSRGGLYNKMSRFGL 645