Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  187 bits (475), Expect = 6e-52
 Identities = 114/323 (35%), Positives = 181/323 (56%), Gaps = 29/323 (8%)

Query: 146 LIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRA 205
           L+G+S   +++   +  +  +  +IL+ GESGTGKE VA+AIHK  SRA KPF++VNC A
Sbjct: 143 LVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARAIHKHGSRADKPFVAVNCAA 202

Query: 206 MSEKRLESELFG------LGETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQE 259
           + E  LESE+FG       G   +    F  QAD GTL L+++  +P + Q  +LR LQE
Sbjct: 203 IPEGLLESEMFGHRKGAFTGAVADRVGRFQ-QADKGTLFLDEVGDMPLALQAKILRALQE 261

Query: 260 GTVET--RQGVRAVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDI 317
             +E       R VDVR++AA + ++  A+ + +F E+LY+ +NV  I +PSL+ER  DI
Sbjct: 262 RVIEPVGDPRERKVDVRVIAATNKNLLDAVANKEFREDLYYRLNVFPIPLPSLRERVEDI 321

Query: 318 VLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDE 377
             LA+HF Q  S     +   FS +A++ +  YHWPGN+REL N ++R  +++ + V+++
Sbjct: 322 APLARHFAQTLSATAGKRITGFSAEALQAMAAYHWPGNIRELQNCVERATIVAASPVIED 381

Query: 378 SQLDLPK---------------RSDG---RRSLKSIRERSERDALLLVLESHSGQVSTAA 419
             +DLP                 SDG    + L +     E+  +L  L+  +G  + AA
Sbjct: 382 --IDLPGYLFASKPNQGDVTAILSDGPGIPQDLDAALAEVEKAYILAALQESNGVQAAAA 439

Query: 420 KELGVSRATMYRLLNKHNLITDE 442
            ++G+S  + +  L K  +  D+
Sbjct: 440 AKIGISERSFWYRLKKLGIQVDK 462