Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  255 bits (652), Expect = 2e-72
 Identities = 145/367 (39%), Positives = 220/367 (59%), Gaps = 11/367 (2%)

Query: 82  WLAFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSA 141
           W+A +   QL       F+  +  DF T P   +++  T+G   GM +L  K       A
Sbjct: 75  WIAVLSADQLRMPAFGDFVCEWFFDFHTLPFDVSRVQVTLGRAFGMARLRGKGAVKVDEA 134

Query: 142 GNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISV 201
            +  L+GES P++ LR  + ++ PT+  +LI GESGTGKE VA+ +H+ S R+++PFI++
Sbjct: 135 THE-LLGESRPIRELRKLLGKLAPTESPVLIRGESGTGKELVARTLHRQSQRSEQPFIAI 193

Query: 202 NCRAMSEKRLESELFGLGE-----TEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRF 256
           NC A+ E  ++SELFG  +       + +   +  ADGGTL L++I  LP   Q NLLRF
Sbjct: 194 NCGAIPEHLIQSELFGHEKGAFTGAHQRKTGRIEAADGGTLFLDEIGDLPLELQANLLRF 253

Query: 257 LQEGTVETRQGVRA--VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERA 314
           LQE  +E   G +   VDVR+LAA   D+E+A+  G F E+LY+ +NVL++    L++R 
Sbjct: 254 LQEKHIERVGGSQPIPVDVRVLAATHVDLERAIEQGRFREDLYYRLNVLQVVTAPLRDRH 313

Query: 315 SDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVV 374
            D+ +LA HF   YS E   + RSFSD A+  + R+ WPGNVREL N+++R +++++   
Sbjct: 314 GDLSMLANHFAHFYSVETGRRPRSFSDHALAAMGRHDWPGNVRELANRVRRGLVLAEGRQ 373

Query: 375 LDESQLDLPKRSDGRR---SLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYR 431
           ++   L L      ++   +L+  ++R+ER AL  VL  HS  +S AAK LG+SR T YR
Sbjct: 374 IEAQDLGLQLLDPEQQPLGTLEEYKQRAERQALCDVLNRHSDNLSVAAKVLGISRPTFYR 433

Query: 432 LLNKHNL 438
           LL+KH +
Sbjct: 434 LLHKHQI 440