Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas sp. RS175

 Score =  201 bits (511), Expect = 4e-56
 Identities = 146/425 (34%), Positives = 218/425 (51%), Gaps = 18/425 (4%)

Query: 28  LEKVGWRCTQVADLRKADALFVETGPCIGIVDLSHDEFSLNGIANLVSSHKQVRWL-AFI 86
           LE  G+     +   +ADAL       +  +DL   E   NG+  L     Q  W+   I
Sbjct: 28  LEDEGYTVATASSAAQADALLQRQVFDLCFLDLRLGED--NGLDVLAQMRIQAPWMRVVI 85

Query: 87  REAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSAG--NM 144
             A  + DT    I     D+   P    QL      QL + +L  ++    G     N 
Sbjct: 86  VTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEMRKPND 145

Query: 145 GLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCR 204
           GL   S  MK + +  +++  TD +ILI GESGTGK  +A+AIH  S RA+K  +++NC 
Sbjct: 146 GLDSHSPAMKVVLETARQVASTDANILILGESGTGKGELARAIHGWSKRAKKSCVTINCP 205

Query: 205 AMSEKRLESELFGLGE-----TEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQE 259
           +++ + +ESELFG          E     + QADGGTL L++I   P + Q  LLRF+Q+
Sbjct: 206 SLTAELMESELFGHSRGAFTGASESTLGRVNQADGGTLFLDEIGDFPLTLQPKLLRFIQD 265

Query: 260 GTVETRQG---VRAVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASD 316
              E R G    R  DVRILAA + ++E  + DG F E+L + +NV+ +++P L+ERA D
Sbjct: 266 KEYE-RVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYRLNVITLHLPPLRERAED 324

Query: 317 IVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLD 376
           I+ LA  FL  + KEY   AR+FSD+A   L  Y WPGN+REL N ++R  ++     ++
Sbjct: 325 ILTLADRFLARFVKEYARPARAFSDEAREALLGYRWPGNIRELRNVVERASIICAQEKVE 384

Query: 377 ESQLDL---PKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLL 433
            S L +   P  +  R       +  E+  +  VL + +  +  AAK LG+  +T+YR  
Sbjct: 385 ISHLGMAEQPVNNAPRIGAALSLDELEKAHIGAVLAT-ADTLDQAAKTLGIDASTLYRKR 443

Query: 434 NKHNL 438
            ++NL
Sbjct: 444 KQYNL 448