Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., nif-specific transcriptional activator NifA from Magnetospirillum magneticum AMB-1

 Score =  188 bits (478), Expect = 3e-52
 Identities = 112/256 (43%), Positives = 160/256 (62%), Gaps = 10/256 (3%)

Query: 133 KVWPHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSS 192
           +V P     G   ++G S  M R+  Q+++  PT  +IL+ GESGTGKE VA+AIH  S+
Sbjct: 197 EVRPTLPIRGLEDVVGTSEAMARVFAQVQQAAPTKATILLRGESGTGKELVARAIHILSA 256

Query: 193 RAQKPFISVNCRAMSEKRLESELFG------LGETEEGQQPFLLQADGGTLLLNDILTLP 246
           RAQKPFI VNC A+SE  LESELFG       G   + +  F L + GGTL L++I  + 
Sbjct: 257 RAQKPFIKVNCAALSESVLESELFGHEKGAFTGAVADRKGRFEL-SSGGTLFLDEIGEIS 315

Query: 247 KSQQLNLLRFLQEGTVETRQGVRA--VDVRILAANSSDIEKALIDGDFNEELYHYINVLR 304
            + Q  LLR LQEG  E   G +   VDVR++AA + D+E  + DG F  +LY+ +NV+ 
Sbjct: 316 SNFQAKLLRVLQEGEFERVGGNKTVKVDVRLIAATNRDLEAGVADGSFRADLYYRLNVVP 375

Query: 305 INVPSLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIK 364
           + +P L+ER+ DI LLA +FL+++++E N +  +FS +A+  L R ++PGNVREL N + 
Sbjct: 376 LFLPPLRERSGDIPLLAMYFLKQFNEE-NGRGLAFSQNALEALQRCYFPGNVRELENCVY 434

Query: 365 RVVLMSDTVVLDESQL 380
           R   M+   V+DE  L
Sbjct: 435 RTATMTKGEVIDEMDL 450