Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  206 bits (524), Expect = 1e-57
 Identities = 127/385 (32%), Positives = 214/385 (55%), Gaps = 21/385 (5%)

Query: 67  LNGIANLVSSHKQVRWL-----AFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTI 121
           ++GIA L    K+++ L       I  A  S +T  + +    +D+   P+    L +T+
Sbjct: 62  MDGIATL----KEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117

Query: 122 GHQLGMLKLEKKVWPHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKE 181
              L          P   +A   G++G+S  M+ L  +I  + P++ ++LI+G+SGTGKE
Sbjct: 118 EKALAHTHSIDAETPAV-TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176

Query: 182 TVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGLGE-----TEEGQQPFLLQADGGT 236
            VA+AIH +S+R++KP +++NC A++E  LESELFG  +      ++ ++   ++ADGGT
Sbjct: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236

Query: 237 LLLNDILTLPKSQQLNLLRFLQEGTVET--RQGVRAVDVRILAANSSDIEKALIDGDFNE 294
           L L++I  +    Q+ LLR +QE  V+      + +VDVR++AA   D+   +  G F +
Sbjct: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296

Query: 295 ELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPG 354
           +LY+ +NV+ I VPSL++R  DI LLA HFLQ +++      + F+  A+  L  Y WPG
Sbjct: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356

Query: 355 NVRELMNQIKRVVLMSDTVVLDESQLDLPKRSD----GRRSLKSIRERSERDALLLVLES 410
           N+REL N ++R V++     + E +L L   S     G+          E++ +L  LE 
Sbjct: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416

Query: 411 HSGQVSTAAKELGVSRATMYRLLNK 435
             G  + AA++LG++R T+   L++
Sbjct: 417 TGGNKTEAARQLGITRKTLLAKLSR 441