Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  188 bits (478), Expect = 3e-52
 Identities = 141/418 (33%), Positives = 214/418 (51%), Gaps = 31/418 (7%)

Query: 42  RKADALFVETGPCIGIVDLSHDEFSLNGIANL--VSSHKQVRWLAFIREAQLSSDTICQF 99
           R A  LF +  P + ++D+   E  ++GI  L  + SH + R    +  A    +T  + 
Sbjct: 38  RTALHLFADIHPDVVLMDIRMPE--MDGIKALKEMRSH-ETRTPVILMTAYAEVETAVEA 94

Query: 100 IVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSAGNMG-----LIGESMPMK 154
           +     D+   P  D   L+ I  +   L+  KK   H   A +       ++  S  M 
Sbjct: 95  LRCGAFDYVIKPF-DLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMM 153

Query: 155 RLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESE 214
            +     +I  +  S+LI GESGTGKE +A+AIH  S RA+ PFI VNC A+ E  LESE
Sbjct: 154 DICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESE 213

Query: 215 LFGLGE-----TEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEGTVETRQGVR 269
           LFG  +      +  +Q    +A+ GTLLL++I  +P   Q  LLR LQE   E   G +
Sbjct: 214 LFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQ 273

Query: 270 A--VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIVLLAKHFLQE 327
              VD+RI+AA + D++  + +G F E+L++ +NV+ + +P L++R  DI LLA HFLQ+
Sbjct: 274 TIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQK 333

Query: 328 YSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDESQL------- 380
           +S E           A+  LT + WPGN+REL N I+R V+M+   ++    L       
Sbjct: 334 FSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQP 393

Query: 381 -----DLPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVS-RATMYRL 432
                ++     G R+LK   +R E+  ++ VLE   G  +  A  LG+S RA MY+L
Sbjct: 394 VCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKL 451