Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., sigma-54-dependent response regulator transcription factor ZraR from Escherichia coli ECRC62

 Score =  204 bits (518), Expect = 6e-57
 Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 23/386 (5%)

Query: 67  LNGIANLVSSHKQVRWL-----AFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTI 121
           ++GIA L    K+++ L       I  A  S +T  + +    +D+   P+    L +T+
Sbjct: 62  MDGIATL----KEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117

Query: 122 GHQLGMLKLEKKVWPHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKE 181
              L          P   +A   G++G+S  M+ L  +I  + P++ ++LI+G+SGTGKE
Sbjct: 118 EKALAHTHSIDAETPAV-TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176

Query: 182 TVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGLGE-----TEEGQQPFLLQADGGT 236
            VA+AIH +S+R++KP +++NC A++E  LESELFG  +      ++ ++   ++ADGGT
Sbjct: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236

Query: 237 LLLNDILTLPKSQQLNLLRFLQEGTVETRQGVR---AVDVRILAANSSDIEKALIDGDFN 293
           L L++I  +    Q+ LLR +QE  V+ R G     +VDVR++AA   D+   +  G F 
Sbjct: 237 LFLDEIGDISPMMQVRLLRAIQEREVQ-RVGSNQTISVDVRLIAATHRDLAAEVNAGRFR 295

Query: 294 EELYHYINVLRINVPSLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWP 353
           ++LY+ +NV+ I VPSL++R  DI LL  HFLQ +++      + F+  A+  L  Y WP
Sbjct: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLVGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355

Query: 354 GNVRELMNQIKRVVLMSDTVVLDESQLDLPKRSD----GRRSLKSIRERSERDALLLVLE 409
           GN+REL N ++R V++     + E +L L   S     G+          E++ +L  LE
Sbjct: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415

Query: 410 SHSGQVSTAAKELGVSRATMYRLLNK 435
              G  + AA++LG++R T+   L++
Sbjct: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441