Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., Sigma-54 interaction domain protein from Bacteroides ovatus ATCC 8483

 Score =  186 bits (473), Expect = 1e-51
 Identities = 115/369 (31%), Positives = 200/369 (54%), Gaps = 21/369 (5%)

Query: 89  AQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIG---------HQLGMLKLEKKVWPHFG 139
           A   +D   + I     DF   P    +LL+T+           ++ MLK + ++     
Sbjct: 102 AYADTDKAVRAIKAGATDFIPKPWEKDKLLATLTSGMRLRQSQQEVNMLKEQVEILSGQN 161

Query: 140 SAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFI 199
           ++ N  +IGES  M+ +   I ++  TD +ILI GE+GTGK+ +A+ +++ S R  KPF+
Sbjct: 162 ASEN-DIIGESPAMQEVFATINKLSNTDANILILGENGTGKDVIARLLYRCSPRYGKPFV 220

Query: 200 SVNCRAMSEKRLESELFGLG-----ETEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLL 254
           +++  ++ E+  ESELFG       + ++ +   +  A  GTL L++I  L    Q  LL
Sbjct: 221 TIDLGSIPEQLFESELFGFEKGAFTDAKKSKAGRMEVATNGTLFLDEIGNLSLPMQSKLL 280

Query: 255 RFLQEGTVETRQGVRAV--DVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKE 312
             +++  +      + +  DVR++ A ++DI + + DG+F ++L + IN + I++P L+E
Sbjct: 281 TAIEKRQISRLGSTQTIPIDVRLICATNADIRQMVEDGNFRQDLLYRINTIEIHIPPLRE 340

Query: 313 RASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDT 372
           R +DI+LLA+HFL  Y+++Y  +    + +A   L +Y WPGNVREL + I+R V++ D 
Sbjct: 341 RGNDIILLAEHFLNHYARKYKKEMHGLTREAKNKLLKYAWPGNVRELQHTIERAVILGDG 400

Query: 373 VVLDESQL---DLPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATM 429
            +L          PK+      + ++ E+ ER A+   L    G +S AA+ LG++R  +
Sbjct: 401 SMLKPENFLFHATPKQKKDEEMVLNL-EQLERQAIEKALRISDGNISRAAEYLGITRFAL 459

Query: 430 YRLLNKHNL 438
           YR L K  L
Sbjct: 460 YRKLEKLGL 468