Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., response regulator regulating glmY sRNA in two-component system with sensor protein GlrK from Escherichia coli BL21

 Score =  199 bits (507), Expect = 1e-55
 Identities = 114/302 (37%), Positives = 179/302 (59%), Gaps = 9/302 (2%)

Query: 146 LIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCRA 205
           ++  S  M RL +Q + +  +DVS+LI G+SGTGKE  A+AIH  S R  KPFI++NC A
Sbjct: 136 IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGA 195

Query: 206 MSEKRLESELFGLGE-----TEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQEG 260
           + E+ LESELFG            ++     A+GGTL L++I  +P   Q+ LLR LQE 
Sbjct: 196 LPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQER 255

Query: 261 TVETRQGVRAVD--VRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASDIV 318
            V      R +D  VRI++A   D+ KA+  G+F E+LY+ +NV+ + +P+L ER  DI 
Sbjct: 256 KVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIP 315

Query: 319 LLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLDES 378
           LLA H L++ ++ +    R+FS DA++ L    WPGNVR+L+N I++ V ++ + V+ ++
Sbjct: 316 LLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDA 375

Query: 379 QLD--LPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLNKH 436
            ++  L   +    +    R + E + L  +L+   G V+ AA+  G +R   Y+LL++H
Sbjct: 376 LVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435

Query: 437 NL 438
            L
Sbjct: 436 EL 437