Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  291 bits (746), Expect = 2e-83
 Identities = 175/419 (41%), Positives = 241/419 (57%), Gaps = 7/419 (1%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F+   L   LL+A+ E+ F  PT VQA AIP AL+GRD+  +A TG+GKTAAFV+P L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           L+  P +     + LIL PTRELA Q  ++ +  ++ T +    ITGG  ++  A +L  
Sbjct: 62  LIG-PAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             DI++ TPGR++E ++A   D + +E L+LDEADRMLDMGF   V RL +EC  R+QT+
Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTE 244
           LFSAT  G  +    A +L +P H+             Q    AD   HK ++L  +L  
Sbjct: 181 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN 240

Query: 245 QA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
           +  +++IVF  TR     +   L   +     + GE  Q  R  AI R + G V IL+AT
Sbjct: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARG+DV  +  VINFD+PRS D Y+HRIGRTGRAG  G+AISL+   D  +M+ +ER
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360

Query: 364 YIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATK 422
           Y+K+  + R I  ++  +  P  KK K   K     G  KKKT +K   K T  K+ TK
Sbjct: 361 YLKQSFERRTIKEVKGTYTGP--KKVKASGKAV---GVKKKKTDAKGDKKKTGAKSPTK 414