Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  277 bits (708), Expect = 5e-79
 Identities = 159/421 (37%), Positives = 241/421 (57%), Gaps = 10/421 (2%)

Query: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
           TF+ L LD  LL  + E+G + PT +Q +AIP  L G+DVLA A TGTGKTAAF +P +Q
Sbjct: 7   TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66

Query: 64  YLLDFPRRKAGPA---RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD 120
             ++ P ++   +   R L+L PTRELA QV +  QA AK T L I  + GG   +   +
Sbjct: 67  RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126

Query: 121 ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWR 180
            L    DI++ATPGRLL++   +      +E L+LDEADRMLDMGF P + R+       
Sbjct: 127 HLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186

Query: 181 KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK 240
           +QTL FSAT + + ++     +++DP  V   P     + + Q  +  D    K ELL  
Sbjct: 187 RQTLFFSATFDSK-IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKK-RKRELLSY 244

Query: 241 IL-TEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299
           ++ ++  ++ +VF KTR+    L  EL+   I    I G+  Q  R  A+  F+ G V  
Sbjct: 245 LIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304

Query: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359
           L+ATDVAARG+D+  +  V+N+D+P  A+ Y+HRIGRTGRAG  G+A+SL+   +QP + 
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLE 364

Query: 360 RVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKA 419
            +ER +   + + ++ G  P    PV  ++    +++A + + K+K  ++ K  A + K 
Sbjct: 365 AIERLLNTRLPQEWLKGFEP---SPVVHEENSP-RRSAGRSSEKRKLKAQLKIHAQRGKK 420

Query: 420 A 420
           A
Sbjct: 421 A 421