Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  271 bits (693), Expect = 3e-77
 Identities = 158/417 (37%), Positives = 230/417 (55%), Gaps = 4/417 (0%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F DL LD  LL+ +    F + T++Q +AIP  + GRD+LAS+ TG+GKT AFV+P L  
Sbjct: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
            L      A   R LIL PTRELA QV  + +++          ITGG  + +    LA 
Sbjct: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW-RKQT 183
               +VATPGRL +++D        +E L+LDEADRMLD+GF   + R+    +  R+QT
Sbjct: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           L+FSATL+   V     +LL +P  +       E K I+Q ++  D + HK  LL +IL 
Sbjct: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246

Query: 244 EQAERS-IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
           +   R  I+F  TR     L  +L +  +    + G + Q +RN  + +F      IL+ 
Sbjct: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           TDVA+RG+D+P ++HVINFD+P+  + Y+HR+GRTGRAG KG A+SLV   D     RVE
Sbjct: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366

Query: 363 RYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKA 419
            ++++E++   + GL  K K    K ++   K    +   K K  SK K  A + K+
Sbjct: 367 AFLQQEIQFEVLAGLEGKFKG--LKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDKS 421