Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

 Score =  311 bits (798), Expect = 2e-89
 Identities = 183/424 (43%), Positives = 253/424 (59%), Gaps = 18/424 (4%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F+   L   LL+A+ E+ F  PT VQA AIP AL GRD+  +A TG+GKTAAFV+P L  
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61

Query: 65  LLDFPRRKAGPA---RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
           L+D     +GP    R LIL PTRELA Q  +Q Q  ++ T +    +TGG  ++E A +
Sbjct: 62  LVDL----SGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAM 117

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
           L    D+++ TPGRLLE ++A   D   ++ LILDEADRMLDMGF   ++RL  EC  R+
Sbjct: 118 LRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENRE 177

Query: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
           QTLLFSAT  G  +      +LKDP H+      +  +   Q    AD   HK ++ + +
Sbjct: 178 QTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWL 237

Query: 242 LTEQA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           L  +  +++I+F  TR     +   L    +    + GE  Q  R  AI RF++G   +L
Sbjct: 238 LANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVL 297

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATDVAARG+D+  +  VINFD+PRS D Y+HR+GRTGRAG +G+AISL+  +D  +M+ 
Sbjct: 298 VATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSS 357

Query: 361 VERYIKEEVKERFIDGLR-----PKHKKPVFK----KKKKDIKKTAD-KGAVKKKTTSKP 410
           +ERY+K++ + R I  ++     PK  K   K    KKKK  KKT D K A K+K T+KP
Sbjct: 358 IERYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKP 417

Query: 411 KAKA 414
           KA A
Sbjct: 418 KANA 421