Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  269 bits (687), Expect = 2e-76
 Identities = 148/375 (39%), Positives = 228/375 (60%), Gaps = 7/375 (1%)

Query: 1   MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
           M ++F++L L P +  A+ EMG++  T +QA+AIP  L GRDV+ +A TGTGKTAAF +P
Sbjct: 1   MTQSFSELSLSPAIERAVAEMGYATMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFTLP 60

Query: 61  ALQYLLDFPRRKAGPAR----ILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
            LQ +L        PAR     L+L PTRELA QVAEQ +  AK T L    + GG+  +
Sbjct: 61  LLQRMLKHENASTSPARHPVRALVLLPTRELADQVAEQVKLYAKYTNLRSTVVFGGMDMK 120

Query: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTE 176
                L    +++VATPGRLL++I+A+      +E+++LDEADRMLD+GF P + R+ + 
Sbjct: 121 PQTAELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180

Query: 177 CRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVE 236
              ++ TLLFSAT     ++      L+DP  ++          + Q ++R +D   K  
Sbjct: 181 LPKQRTTLLFSATFSPE-IKRLANSYLQDPVTIEVARSNATASTVEQHFYRVED-DDKRG 238

Query: 237 LLKKILTEQA-ERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREG 295
           +LK+IL E+  +++ VF+ ++   A L   LE+  +    + G+  QD R  A+  F+ G
Sbjct: 239 ILKQILRERGLKQAFVFVNSKLGCARLARSLEREGLNTTALHGDKSQDERLKALEAFKTG 298

Query: 296 DVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQ 355
            V++L+ TDVAARG+D+ D+  V NFD+P +A+ Y+HRIGRTGRAG  G+A+S V   D 
Sbjct: 299 AVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSGRDT 358

Query: 356 PMMARVERYIKEEVK 370
            +M  +E+ + ++++
Sbjct: 359 RLMGDLEKLLGKKLE 373