Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., ATP-dependent RNA helicase SrmB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  503 bits (1295), Expect = e-147
 Identities = 256/422 (60%), Positives = 316/422 (74%), Gaps = 1/422 (0%)

Query: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
           + TF++LELD  LL+A+++ GF+RPT +QA AIP ALDGRDVL SAPTGTGKTAA+++PA
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 62  LQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
           LQ+LLDFPR+K+GP RILILTPTRELAMQVA+ A+ LAK+T L+I TITGGV Y  HA++
Sbjct: 63  LQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEV 122

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
            +  QDIVVAT GRLL+YI  E FDCRA+E LILDEADRMLDMGF   ++ ++ E RWRK
Sbjct: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182

Query: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
           QT+LFSATLEG  ++ F   LL+DP  V A P  RERKKI QWY+RAD+  HKV LLK +
Sbjct: 183 QTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLKHL 242

Query: 242 L-TEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           L  + A RSIVF++ RER+ +L   L  A I   +++GEM Q +RN  I R  +G VN+L
Sbjct: 243 LKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATDVAARGID+PD+SHVINFD+PRS D YLHRIGRTGRAG+KG AISLVEAHD  ++ +
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLK 362

Query: 361 VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAA 420
           + RYI+E +K R ID LRP  + P  K   K  KK   K A KKK   K K +  K+   
Sbjct: 363 IGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVLAKRAEKKKEKEKEKPRVKKRHRD 422

Query: 421 TK 422
           TK
Sbjct: 423 TK 424