Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., Superfamily II DNA and RNA helicases from Kangiella aquimarina DSM 16071

 Score =  283 bits (725), Expect = 6e-81
 Identities = 158/410 (38%), Positives = 244/410 (59%), Gaps = 8/410 (1%)

Query: 14  LLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKA 73
           L +A+E++    PT+VQ ++I   LDG+DV+ SA TG+GKTAAF++P +  LL+ P R  
Sbjct: 14  LQKALEKLQLPTPTEVQQQSIQPILDGKDVMVSAETGSGKTAAFLLPIIHKLLEKPSRHT 73

Query: 74  GPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVATP 133
              R+LIL PTRELA Q+ + A+ L + T +    I GG +Y+    I     +I++ATP
Sbjct: 74  S-TRVLILAPTRELARQINKHAKDLTQFTPIKTGLIIGGAEYKYQQSIFRDNPEIIIATP 132

Query: 134 GRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSATLEGR 193
           GR+LE+ + E  D   +E+L++DEAD+M +MGF   V  ++  C   +QTLLFSATL+ +
Sbjct: 133 GRMLEHCEKESADLNDLEYLVIDEADKMFEMGFTDDVQAIAGYCNSERQTLLFSATLKTK 192

Query: 194 GVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL-TEQAERSIVF 252
           G+   T  L+ +P  +       +   I Q+   ADD+ HK +L + +L  E+  ++IVF
Sbjct: 193 GIRHLTDYLMDEPEAIVLNTFEAKNDAIEQFIITADDLNHKEKLTQWLLANEEYRKAIVF 252

Query: 253 LKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDV 312
             T+E++  L   +   +I    + G++ Q  RN+ +++FR+  + +L+A+DVAARGIDV
Sbjct: 253 CNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKVLIASDVAARGIDV 312

Query: 313 PDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKER 372
            DI  VINFD+  +A+ Y+HRIGRT RAG+ G AISL+   +  +M  +E+ I  + + R
Sbjct: 313 KDIDLVINFDMAHNAEDYIHRIGRTARAGETGTAISLISHREWNLMVTIEKAISGKFQLR 372

Query: 373 FIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATK 422
            I  L+ K+K P      K +K +      KKK     K  A +KK   K
Sbjct: 373 TIKELQGKYKGP------KKLKASGKAAGSKKKKDGAKKLTAREKKRLEK 416