Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., Superfamily II DNA and RNA helicases from Kangiella aquimarina DSM 16071

 Score =  291 bits (744), Expect = 3e-83
 Identities = 171/427 (40%), Positives = 243/427 (56%), Gaps = 9/427 (2%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F+ L+L   LL+A+ + G++ P+ +Q + IP  L+GRD++A+A TGTGKTA F +P LQ 
Sbjct: 3   FSKLDLIQPLLDALHKSGYTTPSPIQQKVIPLILNGRDIMAAAQTGTGKTAGFALPVLQR 62

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           L +  R  A  AR LILTPTRELA QV +  Q  A N  L    + GGV+       L  
Sbjct: 63  LSEGKRVSANSARCLILTPTRELAEQVHQSVQKYAANLSLKSVVVYGGVKINPQMLKLRR 122

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
             D++VATPGRLL+ ++        +E+L+LDEADRMLDMGF P++ R+  +    +QTL
Sbjct: 123 GTDVLVATPGRLLDLMEQNAVSFTDLEFLVLDEADRMLDMGFLPSIKRIIGKLPKNRQTL 182

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTE 244
           LFSAT     ++  +   L +PA V+          + QW +  D       L   I   
Sbjct: 183 LFSATF-SESIKAISQQFLTNPALVETGQTNTTATTVKQWIYPVDKKQKPALLSYLIGHH 241

Query: 245 QAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATD 304
           + ++ +VF++TR     L  +L+K  I    I G   Q  RN A++ F+ G+V +L+ATD
Sbjct: 242 RWDQLLVFVRTRRGANRLSVDLDKRGIKATAIHGGKSQGARNRALAEFKSGEVTVLVATD 301

Query: 305 VAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERY 364
           VAARG+D+  +  VIN+DLP  A+ Y+HRIGRTGRAG+KG AISLV A +   +  ++  
Sbjct: 302 VAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGSAISLVSADEVDDLRAIQDL 361

Query: 365 IKEEVKERFIDGLRPKHKKPVF------KKK--KKDIKKTADKGAVKKKTTSKPKAKATK 416
           I+++++ R  DG  P+H  P        KKK  KK + K     A KK   S+ K K  K
Sbjct: 362 IRQQLERRIADGFEPQHSLPETPLKSPRKKKPHKKKLAKAQLNQANKKSGVSQNKNKRRK 421

Query: 417 KKAATKA 423
            K   KA
Sbjct: 422 PKPTNKA 428