Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., ATP-dependent RNA helicase SrmB from Erwinia tracheiphila SCR3

 Score =  498 bits (1281), Expect = e-145
 Identities = 247/418 (59%), Positives = 317/418 (75%), Gaps = 1/418 (0%)

Query: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
           + TF++LELD  LL A++E GFSRPT +QA AIP AL+GRD+L SAPTGTGKTAA+++P 
Sbjct: 3   VTTFSELELDENLLNALQEKGFSRPTAIQAAAIPPALEGRDILGSAPTGTGKTAAYLLPV 62

Query: 62  LQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
           LQ+LLDFPR+K+GP RIL+LTPTRELAMQVA+QA+ LA++T L+I TITGGV Y  HA++
Sbjct: 63  LQHLLDFPRKKSGPPRILVLTPTRELAMQVADQARELARHTHLDIATITGGVAYMNHAEV 122

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
            +  QD+VVAT GRLL+YI  E FDCRAIE LILDEADRMLDMGF   ++ ++ E RWRK
Sbjct: 123 FSKNQDVVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETIAAETRWRK 182

Query: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
           QTLLFSATLEG  ++ F+  LL DP  V+A+P RRERKKI QWY+RADD+ HK  LL  +
Sbjct: 183 QTLLFSATLEGGAIKDFSERLLNDPVEVEADPARRERKKIQQWYYRADDITHKTALLVHL 242

Query: 242 LTE-QAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           L + +  RS++F++ RER+ +L   L +A I  ++++GE+ Q RRN AI R  +G VN+L
Sbjct: 243 LKQPEVSRSVIFVRKRERVHELCGWLREAGINTSYLEGELEQYRRNEAIKRVDDGRVNVL 302

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATDVAARGID+ D+SHV NFDLPR+AD YLHRIGRTGRAGKKGIAISLVEAHD  ++ +
Sbjct: 303 VATDVAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGKKGIAISLVEAHDHMLLGK 362

Query: 361 VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKK 418
           + RY+ E +K R I+ LRP  + P  K+  K  +K   K   KK+  S+      KK+
Sbjct: 363 ISRYVNEPLKARIIEELRPTTRAPSEKQNGKPSRKVLAKRKEKKEKDSEAAKPRVKKR 420