Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  492 bits (1266), Expect = e-143
 Identities = 251/414 (60%), Positives = 309/414 (74%), Gaps = 2/414 (0%)

Query: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
           + TF++LELD  LL A+E  GF+RPT +QA AIP AL+GRDVL SAPTGTGKTAA+++P 
Sbjct: 3   VTTFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPV 62

Query: 62  LQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
           LQ+LLDFPR+K+GP RILILTPTRELAMQVA+ A+ LA NT L+I TITGGV Y  HA++
Sbjct: 63  LQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEV 122

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
            +  QDIVVAT GRLL+YI  E FDCRA+E LILDEADRMLDMGF   ++ ++ E RWR 
Sbjct: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRN 182

Query: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
           QT+LFSATLEG  ++ F   LL+DP  V A P  RERKKI QWY+RAD++ HKVELLK +
Sbjct: 183 QTMLFSATLEGEAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKVELLKHL 242

Query: 242 L-TEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           L  E A R+IVF++ RER+ +L   L  A I   +++GEM Q +R   I R  +G VN+L
Sbjct: 243 LKQEDALRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNVL 302

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATDVAARGID+PD+SHVINFD+PRS D YLHRIGRTGRAG+KGIAISLVEAHD  ++ +
Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDYLLLQK 362

Query: 361 VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKK-KTTSKPKAK 413
           + RY+ E +K R ID LRP  + P  K   K  KK   K A +K K   KP+ K
Sbjct: 363 IGRYVDEPLKARVIDELRPTTRAPSEKMTGKPSKKALAKRAERKEKEKEKPRVK 416