Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., ATP-dependent RNA helicase SrmB from Escherichia coli ECRC62

 Score =  509 bits (1311), Expect = e-149
 Identities = 259/422 (61%), Positives = 318/422 (75%), Gaps = 1/422 (0%)

Query: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61
           + TF++LELD  LLEA+++ GF+RPT +QA AIP ALDGRDVL SAPTGTGKTAA+++PA
Sbjct: 3   VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 62  LQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
           LQ+LLDFPR+K+GP RILILTPTRELAMQVA+ A+ LAK+T L+I TITGGV Y  HA++
Sbjct: 63  LQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEV 122

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
            +  QDIVVAT GRLL+YI  E FDCRA+E LILDEADRMLDMGF   ++ ++ E RWRK
Sbjct: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182

Query: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
           QTLLFSATLEG  ++ F   LL+DP  V A P  RERKKI QWY+RADD+ HK  LL  +
Sbjct: 183 QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHL 242

Query: 242 LTE-QAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           L + +A RSIVF++ RER+ +L   L +A I   +++GEM Q +RN AI R  EG VN+L
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATDVAARGID+PD+SHV NFD+PRS D YLHRIGRT RAG+KG AISLVEAHD  ++ +
Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362

Query: 361 VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAA 420
           V RYI+E +K R ID LRPK + P  K+  K  KK   K A KKK   K K +  K+   
Sbjct: 363 VGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKVKEKEKPRVKKRHRD 422

Query: 421 TK 422
           TK
Sbjct: 423 TK 424