Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., ATP-dependent RNA helicase SrmB from Dickeya dianthicola ME23

 Score =  485 bits (1248), Expect = e-141
 Identities = 245/420 (58%), Positives = 313/420 (74%), Gaps = 2/420 (0%)

Query: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
           F++ +LD  LL+A+ +MGFSRPT +QAEAI  A++GRDVL SAPTGTGKTAA+++P LQ+
Sbjct: 6   FSEFDLDDSLLDALRDMGFSRPTAIQAEAISPAMEGRDVLGSAPTGTGKTAAYLLPVLQH 65

Query: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
           LLDFPR+K+GP RILILTPTRELAMQVA+QA+ALA +T L+I TITGGV Y  HA++ + 
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHAEVFSE 125

Query: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184
            QD+VVAT GRLL+YI  E FDCRA+E LILDEADRMLD+GF   ++ ++ E RWRKQT+
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDLGFAQDIEHIAGETRWRKQTM 185

Query: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTE 244
           LFSATLEG  ++ F   LL DP  V+A+P RRERKKI QWY+RADD+ HK  LL  +L +
Sbjct: 186 LFSATLEGDAIQDFADRLLNDPIKVEADPSRRERKKILQWYYRADDVQHKTALLSHLLKQ 245

Query: 245 -QAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLAT 303
               RSIVF++ RER+ +L   L    I   +++GEM Q +RN AI R  EG VN+L+AT
Sbjct: 246 PDVTRSIVFVRKRERVHELVDWLRSVGIESCYLEGEMVQAKRNEAIKRLSEGRVNVLVAT 305

Query: 304 DVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVER 363
           DVAARG+D+ D+SHV NFDLPR++DVYLHRIGRTGRAG+KG AISLVEAHD  ++ ++ R
Sbjct: 306 DVAARGLDIQDVSHVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLLEKIGR 365

Query: 364 YIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKT-ADKGAVKKKTTSKPKAKATKKKAATK 422
           Y+ E +K R +D LRP  + P  K   K  KK  A +  +K+K   K KAK   +   +K
Sbjct: 366 YLNEPLKARVVDELRPATRAPSPKANGKPSKKVLAKRSELKQKEKEKQKAKVKVRHRDSK 425