Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Dickeya dadantii 3937

 Score =  269 bits (687), Expect = 1e-76
 Identities = 156/379 (41%), Positives = 216/379 (56%), Gaps = 5/379 (1%)

Query: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
           +F  L L   +L A+EE G+  PT VQ +AIP  L+GRD++ASA TGTGKTA F +P LQ
Sbjct: 2   SFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 64  YLLDFPRRKAG--PARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADI 121
            L   P +  G  P R LILTPTRELA Q+ E  QA +K  RL    + GGV        
Sbjct: 62  LLNGRPSQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMK 121

Query: 122 LATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
           L    DI++ATPGRLL+       D   +E L+LDEADRMLDMGF   + R+  +   ++
Sbjct: 122 LRGGVDILIATPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPPKR 181

Query: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
           Q LLFSAT     ++     LL +PA V+        + ++Q  H  D    K ELL  +
Sbjct: 182 QNLLFSATFSDE-IKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKK-RKRELLSHL 239

Query: 242 LTEQAERSI-VFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL 300
           + +   R + VF +T+     L  +L K  I  A I G   Q  R  A++ F++GD+ +L
Sbjct: 240 IGKHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVL 299

Query: 301 LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR 360
           +ATD+AARG+D+  + HV+N++LP   + Y+HRIGRTGRA   G A+SLV   +  ++  
Sbjct: 300 VATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRD 359

Query: 361 VERYIKEEVKERFIDGLRP 379
           +ER +K E+    I G  P
Sbjct: 360 IERLLKREIPRMEIAGYEP 378