Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., RNA helicase CrhR from Azospirillum sp. SherDot2

 Score =  319 bits (817), Expect = 1e-91
 Identities = 173/377 (45%), Positives = 239/377 (63%), Gaps = 3/377 (0%)

Query: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
           TF++L L P++L+++E   ++ PT VQ  AIP AL GRD+LA+A TGTGKTAAF++PAL 
Sbjct: 2   TFSELGLHPLVLKSLEAFEYTVPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPALT 61

Query: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123
              + P   A   R+L+L PTRELA QV + A+  AK  +LNI  + GG+ Y+E   +L+
Sbjct: 62  RTAELPLNGAATPRVLVLAPTRELAKQVTDAARKYAKFMKLNIVDVVGGMPYREQLRLLS 121

Query: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183
              D++V TPGRLL+++   R     +E LILDEADRMLDMGF   V+ ++  C   +QT
Sbjct: 122 RPVDVLVCTPGRLLDHVARRRISLDEVEVLILDEADRMLDMGFLDDVETIAKCCPPTRQT 181

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           +LF+ATL+ R  +    +LL++P  V  E  +     + Q  H ADD+ HK  LL+    
Sbjct: 182 MLFTATLDRRMAQ-LAGNLLRNPERVAVE-SQATAINVEQRLHHADDLDHKRRLLQHFAA 239

Query: 244 -EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
            E+  ++I+F  T+     L  EL  A    A + G+M Q +RN  + R R G V +L+A
Sbjct: 240 QEEVGKAIIFAATKRDADTLAEELSAAGHAAAALHGDMDQTKRNRTLQRLRTGQVRLLVA 299

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           TDVAARGIDV DI+HVINFDLPRSA+ Y+HRIGRTGRAG  G+AIS     D+  + R+E
Sbjct: 300 TDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGRAGASGVAISFAARADRETLVRIE 359

Query: 363 RYIKEEVKERFIDGLRP 379
           RY K  ++   + GL P
Sbjct: 360 RYTKATLEVHVVPGLEP 376