Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., ATP-dependent RNA helicase SrmB from Alteromonas macleodii MIT1002

 Score =  479 bits (1234), Expect = e-140
 Identities = 250/416 (60%), Positives = 303/416 (72%), Gaps = 10/416 (2%)

Query: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
           TF +LELD  L  A  +MGF  PT +Q   IP ALDGRD+LASAPTGTGKTAAF++PA Q
Sbjct: 2   TFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61

Query: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123
           +LLD+PRR+ G  RILILTPTRELA+QV EQA A+ K+T++    ITGG+ Y    + L+
Sbjct: 62  FLLDYPRRQPGATRILILTPTRELALQVYEQALAITKHTQIVCGVITGGINYGTDKETLS 121

Query: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183
              DI+VATPGRLLE+I+ E  DCR IE LILDEADRMLDMGF   V++++ E RWRKQ 
Sbjct: 122 KNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQN 181

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILT 243
           LLFSATLEG+GV+ F  D+L +P  ++A P R+E+ KI QWYH ADDM HK  LL  IL 
Sbjct: 182 LLFSATLEGKGVKTFAHDILNNPEVIEANPSRKEKNKIHQWYHLADDMNHKQALLVNILK 241

Query: 244 EQAERS-IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302
           ++   S +VF+KTRERL  L+  L    IP  W+QGEMPQD+R  A++RF+ G+V ILLA
Sbjct: 242 QETTTSAVVFVKTRERLQMLKDFLASKDIPVCWLQGEMPQDKRIAALARFKSGEVPILLA 301

Query: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362
           TDVAARGIDVP++SHVINFD+PR ADVY+HRIGRTGRAG KG AISLVEAHD  M+A+  
Sbjct: 302 TDVAARGIDVPNVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLVEAHDFDMVAKTA 361

Query: 363 RYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKK 418
           RY+ E +K R ID LRPK+K P    KKK          VK K  +K KAK  KKK
Sbjct: 362 RYMGEPLKARVIDELRPKNKTPKIGPKKK---------KVKAKDKAKAKAKPKKKK 408