Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  269 bits (687), Expect = 2e-76
 Identities = 146/371 (39%), Positives = 221/371 (59%), Gaps = 3/371 (0%)

Query: 1   MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
           ++ +F +L L   ++ ++ ++G++ PT +QA+AIP  L+GRD++  A TGTGKTAAF +P
Sbjct: 12  ILTSFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLP 71

Query: 61  ALQYLLDFPRRKAG-PARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119
            ++ L+    R A    R LIL PTREL  Q+ +  ++  K T L I  + GG    +  
Sbjct: 72  IIEMLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQ 131

Query: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179
             L    DI+VATPGRLL+ I         + +L+LDEAD+MLD+GF   + ++S     
Sbjct: 132 LQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPP 191

Query: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLK 239
           ++QTLLFSAT+  + +    ++ L DP  V+  PP +   K+ Q+ H       K +LLK
Sbjct: 192 KRQTLLFSATMP-KAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLK 250

Query: 240 KILTEQAE-RSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVN 298
           K L E  + RSIVFL+T+     L   LE      A I G   Q +R  A+  F++G++ 
Sbjct: 251 KSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIK 310

Query: 299 ILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMM 358
           +L+ATDVAARGID+P ++HV N+DLP   D Y+HRIGRT RAG+ GIAI+     +  ++
Sbjct: 311 VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLL 370

Query: 359 ARVERYIKEEV 369
             +E+ +K ++
Sbjct: 371 HDIEKLMKIDI 381