Pairwise Alignments

Query, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  270 bits (691), Expect = 6e-77
 Identities = 149/371 (40%), Positives = 225/371 (60%), Gaps = 6/371 (1%)

Query: 4   TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
           TF+DL L   +L AI + G++ PT +QA AIP AL+ RD+   A TGTGKTA+FV+P L 
Sbjct: 3   TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 62

Query: 64  YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123
            LL+  R +A   R LIL PTRELA QVAE  +   KN +LN+  + GGV +++    L 
Sbjct: 63  -LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLE 121

Query: 124 TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183
              D+++ TPGRLL++ +  +     +E L++DEADRMLDMGF P ++R++    + +QT
Sbjct: 122 RGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQT 181

Query: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRAD--DMPHKVELLKKI 241
           L FSAT+    ++      L++P  ++   P    K ++Q    A   D   +  L   +
Sbjct: 182 LFFSATMPPE-IQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLV 240

Query: 242 LTEQAE--RSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299
             E+AE   +I+F   ++ +ADL   L++       + G+M Q  R   +  FR+G + +
Sbjct: 241 RAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTL 300

Query: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359
           L+A+DVAARG+D+PD+SHV NFD+P  A+ Y+HRIGRTGRAG+ G A +LV   D   + 
Sbjct: 301 LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLD 360

Query: 360 RVERYIKEEVK 370
            +E+ I E+++
Sbjct: 361 AIEKLIAEKIE 371