Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 730 a.a., PAS:GGDEF from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  362 bits (930), Expect = e-104
 Identities = 194/430 (45%), Positives = 271/430 (63%), Gaps = 7/430 (1%)

Query: 234 AESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTINDSLGH 293
           A++++  LAY+D LTGL NR+LLL +LS  +   Q+ +  G L +LDLD FK INDSLGH
Sbjct: 279 AQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGH 338

Query: 294 TIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKAE------EVAKQLLTL 347
            +GD ++  +A R+EA  + +   AR+GGDEF VLI  L  ++ E      E+A  L  L
Sbjct: 339 PVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNL 398

Query: 348 ISNPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFMFYEPEMQ 407
           ++ P  +D H+   T SIG+ + P  G    D+L++AD ALYRAK  GRN   F+   MQ
Sbjct: 399 LAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAKDCGRNASQFFHVSMQ 458

Query: 408 AQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHNII-GVEALIRWNHPKRGLLPPGVFM 466
             V   L +E  L  AL + +  L +Q QVD ++  I G EAL+RW HP+ GLL P  F+
Sbjct: 459 QAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLRWQHPEYGLLAPDQFV 518

Query: 467 PIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINISPLQFAQESFIEQVNH 526
            I EE+G IL +G+ I+ +AC       +QG++P +   + +NISP QF Q  FIE+V  
Sbjct: 519 QILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGVNISPRQFLQHDFIERVER 578

Query: 527 ALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLKHL 586
           +L    +    ++LEITE ++++N++  I KM  LK   +S ++DDFGTGYSSL YLK L
Sbjct: 579 SLTLHQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMDDFGTGYSSLTYLKRL 638

Query: 587 AVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGCNQ 646
            VD LKID+SFV     D ND  I+  I+A+A+ LNL VIAEGVE + +LA L+K+GC  
Sbjct: 639 PVDTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVETSEQLAFLEKVGCYT 698

Query: 647 FQGYLFDKPL 656
           +QGYLF +PL
Sbjct: 699 YQGYLFSEPL 708