Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1258 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas sp. S08-1

 Score =  337 bits (865), Expect = 2e-96
 Identities = 187/442 (42%), Positives = 266/442 (60%), Gaps = 11/442 (2%)

Query: 235  ESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTINDSLGHT 294
            + ++ +LAY D LTGL NR LL  +L  A+   +   S G L ++DLD FKT+NDSLGH 
Sbjct: 814  QREIERLAYSDELTGLPNRRLLQDRLQHAMARERREGSFGALLFIDLDHFKTVNDSLGHH 873

Query: 295  IGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKA------EEVAKQLLTLI 348
            +GD L++ V  R+    + +   AR+GGDEF VL+  L+ ++A       EV  +LL  +
Sbjct: 874  VGDDLLREVTARLGHSLRAEDTLARLGGDEFVVLLETLADSQAMAAELAAEVGDKLLASL 933

Query: 349  SNPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFMFYEPEMQA 408
               + V  H    T SIGI++ P  G    D L+Q+DTA+YRAK SGRN   F+ PEMQA
Sbjct: 934  RGSFQVQGHDLMVTGSIGITLHPLAGQDAADALKQSDTAMYRAKHSGRNALHFFAPEMQA 993

Query: 409  QVESFLEIEKGLHEALNQRQLELFYQPQVD-EQHNIIGVEALIRWNHPKRGLLPPGVFMP 467
             ++  L+++  L  A+ + QL L +QPQ++     I G E L+RW HP+RG + P  F+P
Sbjct: 994  VIDQRLQLQSELRLAMARDQLYLVFQPQLELASGRIAGAEVLLRWRHPERGEISPVQFIP 1053

Query: 468  IAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINISPLQFAQESFIEQVNHA 527
            +AEETG I  +G+W++E AC   A+W+      P    LA+N+SP +  Q   +++V   
Sbjct: 1054 LAEETGLIHELGHWVLEHACASLARWQADW---PQLV-LAVNLSPRELRQADCVQRVGDC 1109

Query: 528  LRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLKHLA 587
            LR+  +    +ELEITE +LLE+VE  I  M  LK   +  +IDDFGTGYSSL YLK L 
Sbjct: 1110 LRRHALPNGALELEITEGVLLEDVEHCIATMLALKAQGVRFAIDDFGTGYSSLTYLKRLP 1169

Query: 588  VDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGCNQF 647
            +D LKIDRSF++ L  D +   +V+TIL IAR L LE +AEGVE+  +L  L++  C   
Sbjct: 1170 LDRLKIDRSFIHDLEGDASGGMLVETILMIARNLGLECVAEGVENEVQLDWLRRHDCALG 1229

Query: 648  QGYLFDKPLRAEEIAQRFVSNS 669
            QG+   +PL   E  +    N+
Sbjct: 1230 QGFHLGRPLGEREFIEWMERNA 1251