Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 747 a.a., hypothetical protein from Methylophilus sp. DMC18

 Score =  350 bits (899), Expect = e-100
 Identities = 216/608 (35%), Positives = 343/608 (56%), Gaps = 23/608 (3%)

Query: 70  LLAEQVATTLMLDPGIFKVEIVDDFGDVMT----------RKEKAISEQSQLVSVLASYL 119
           LLAEQ    L L+         +D  ++            R E  +  Q QL  V    +
Sbjct: 142 LLAEQALAKLNLNLEYLVKARTEDLSNINASLRQEIEQRKRTELELFNQKQLAIVTLESI 201

Query: 120 TPAVSVFSAELHQPNSNVVVGKLSFYIDGSSIAKVFIAKTTRVLLFDLLRNTLLTTILLL 179
             AV   + +      N V  K++ +    ++ +  I +  R+L  +  R      + ++
Sbjct: 202 GDAVITTNMQSEVTYLNPVAEKMTGWSKAEAMGRP-ILEVFRILN-ESTRKLAANPVDVV 259

Query: 180 FFYQKLSRPI--TMLITWVNSLNDTQRSPLPLRLTHDDELSELASTFQSMWKGKELAESK 237
             + K+      T+LI    +    + S  P+R   D  +  +   F  +   +++A+ K
Sbjct: 260 LAHNKVCGLANHTLLIAKSGAEYAIEDSAAPIR-DQDGNILGVVLVFHDVSDARQMAQ-K 317

Query: 238 LNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTINDSLGHTIGD 297
           +  LA +D LT L NR LL  +++ AI  A+   S   + + D+D FK +ND+LGH +GD
Sbjct: 318 MTYLAEHDYLTDLPNRLLLTDRITQAISAAKRRGSKLAILFFDIDHFKRVNDTLGHEVGD 377

Query: 298 QLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSP-AKAEEVAKQLLTLISNPYAVDD 356
           QL+K ++ +++   +     +R GGDEF VL+P L+  A   E+A+++L  I +P ++ +
Sbjct: 378 QLLKVLSKKLQMCIRASDTLSRQGGDEFVVLLPELTDDAVPAEIAQKILFSIKDPISIAN 437

Query: 357 HQFYCTVSIGISVFPSVGSCNIDVL-RQADTALYRAKASGRNKFMFYEPEMQAQVESFLE 415
           H+ + T SIGI+V+P  G  N+DVL R AD A+Y AK SGRN + F+  EM A+V + L 
Sbjct: 438 HELFITASIGIAVYPDDGD-NVDVLTRHADAAMYHAKNSGRNNYQFFTKEMSARVAAQLT 496

Query: 416 IEKGLHEALNQRQLELFYQPQVD-EQHNIIGVEALIRWNHPKRGLLPPGVFMPIAEETGQ 474
           +E  L +A++  +L LFYQP+V  +   IIG EALIRW HP+ G++ P  F+ IAE++G 
Sbjct: 497 MENSLQKAISNNELLLFYQPKVSIKTGKIIGAEALIRWVHPQWGMMMPDRFIKIAEDSGL 556

Query: 475 ILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINISPLQFAQESFIEQVNHALRQAGIT 534
           I  IG+W++ +AC Q  +W+  G+  P    +AIN+S ++     F ++V   L Q G+ 
Sbjct: 557 IRGIGHWVLREACTQNKKWQDSGL--PEIP-IAINVSVVELHHAHFTQEVTKVLLQTGLQ 613

Query: 535 GEPIELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLKHLAVDVLKID 594
              +ELE+TES+ ++   + I  + KLKE  + +S+DDFGTGYSSL YLK L V+ +KID
Sbjct: 614 PYHLELEVTESVAIQTEVTVINDLNKLKEMGVRLSVDDFGTGYSSLSYLKLLPVNTIKID 673

Query: 595 RSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGCNQFQGYLFDK 654
           +SF+  + +D ND AIV  I+ +++ L L VIAEGVE  ++L  L+   C++ QGYLF +
Sbjct: 674 KSFIRDIQVDANDAAIVTAIIKMSQSLGLTVIAEGVETQAQLEFLQSHDCDEMQGYLFSR 733

Query: 655 PLRAEEIA 662
           PL A+E A
Sbjct: 734 PLPADEFA 741