Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1059 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score =  307 bits (786), Expect = 2e-87
 Identities = 174/439 (39%), Positives = 257/439 (58%), Gaps = 5/439 (1%)

Query: 246  KQFSATTQVDAHIDSLTGLYNRHGFTKRL----EQCIQNETPLVMLYLDIDNFKNINDSL 301
            K+  A  +  AH D LT L NR    +RL    +Q  +    + +L++D+D FKNINDSL
Sbjct: 615  KRSEARIRFLAHHDVLTELPNRSLCIERLGLALQQAQRKGQRVGVLFIDLDRFKNINDSL 674

Query: 302  GHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADR-IISLIN 360
            GHH+GD +++ VAAR+ + +     +  LGGDEF ++L      +    L +R +ISLI 
Sbjct: 675  GHHVGDALLRSVAARMSQAVRPGDTVSRLGGDEFVVVLNNVADGQEILSLVERRLISLIR 734

Query: 361  QPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKE 420
            QP D+      ++CS+G   YP D  D   L+++AD AMY++K  GR+    F  +MN+ 
Sbjct: 735  QPHDIDGAEIHVSCSVGIAVYPDDAQDIDALMRHADVAMYQSKASGRDTARFFTPEMNER 794

Query: 421  ARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPV 480
            A+ RL LE  L+ A++++ L + YQP+++A    +   EAL+RW+    G + P  FIP+
Sbjct: 795  AQQRLQLESSLRHAIERDELSLHYQPRIDAHSGELICVEALLRWQSAELGQVRPAQFIPI 854

Query: 481  AEKAGLIEHLGRVVMREVFATVKRWKLQGILPGRVAINISPEQFGNPQLIDYLEKLLRTT 540
            AE++G I  +G  V+ +  A    W+  G+   RVAIN+S  Q  +  L++ L   +   
Sbjct: 855  AEESGQIVAIGAWVIEQACAQHAAWRRDGLGAIRVAINMSALQLRDGGLLEVLRGAIALY 914

Query: 541  GLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPIDEL 600
            G+ P ++  ELTES +M  +E +   L+A+K LG  LSIDDFGTGYSSL YL RFPID+L
Sbjct: 915  GVSPGDLEIELTESTLMDAAEQSLVQLHALKSLGVMLSIDDFGTGYSSLNYLNRFPIDKL 974

Query: 601  KIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQGFH 660
            KIDR+FI  +   P  + +   II LG +L L VVAEGVE +++A  L    C  +QG+ 
Sbjct: 975  KIDRSFIHKMLGDPTDMAIARAIIGLGHTLGLRVVAEGVERREEADTLRAARCDELQGYL 1034

Query: 661  FYRPQPKHEVEELFAQNRR 679
              RP P  ++    AQ  R
Sbjct: 1035 ISRPMPAGKLAGWIAQASR 1053



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 20/113 (17%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 13  FAKITSHSPFFFAILNDQHQYVMVNERYCDIAGLSSEEMVGMSDSQVLGEHFYRHLKPFY 72
           +AK+   S     I+N +H+ +  N   C + G    ++VG    Q++ +    H    +
Sbjct: 504 WAKVFEASSEGILIINGEHRILTANRALCRLTGHDLGDLVGEPPEQLMSDGSL-HFADLW 562

Query: 73  ERAFNNEHIESELTLSEIDLETSLHFSLSPIMIN--DRVQYLVFHAIDTSEKQ 123
                    + E+T+   + ++   + ++ ++ +  +R+ + +F +ID S+++
Sbjct: 563 PVLDQRGTWQGEVTVRRRNGDSYPAWLVASVVRDGPERISHYIFTSIDVSDRK 615