Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1510 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  322 bits (826), Expect = 6e-92
 Identities = 211/667 (31%), Positives = 345/667 (51%), Gaps = 32/667 (4%)

Query: 16   ITSHSPFFFAILNDQHQYVMVNERYCDIAGLSSEEMVGMSDSQVLGEHFYRHLKPFYERA 75
            I +HS    ++ +   +Y  +N R+ ++ GLS+EE++G +D Q+      + L+      
Sbjct: 835  IMNHSTSAVSLKDAAGRYEFINMRFEELFGLSAEEVIGKTDQQLFSRDIAQLLR------ 888

Query: 76   FNNEHIESELTLSEIDLETSLHFSLSPIMINDRVQYLVF------HAIDTSEKQILVRSL 129
              +  +E    LS I     + F  S + + D V++ +F       A+ +    + ++  
Sbjct: 889  --SRDLEVMGQLSAIQHLEEMVFPTSKVWL-DSVRFPIFDSNGVVRAVCSQSTDVTMKHH 945

Query: 130  EESESKYALLTTLLPDGLMMVENDC--IISANPSAARLLGFDDAQKLLGENLSRLFIDEK 187
             E + + A          + + +    II+ N S  R+ G+   Q+++G+N   L   + 
Sbjct: 946  AEEQLRLAAKVFDRAGEAITITDSSGNIITVNDSFCRITGYSH-QEVIGKNPRFLQSGKH 1004

Query: 188  TKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAGCTSLL------GNQSQLILLQDA 241
             K  + +   SL+ +    C  G      +  +++    ++       G+    + +   
Sbjct: 1005 GKDFYDAMWRSLIEQG---CWQGEIFNRRKNGEIYPEWLTVNSVRDENGSVVNYVAIFSD 1061

Query: 242  DEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI----QNETPLVMLYLDIDNFKNI 297
              A K      +  A  D LTG+ NR     RL+  +    + +T L +L++D+DNFK I
Sbjct: 1062 ISAIKSSQRRIEFLATHDELTGIPNRSLLMDRLKHAVAQAKRQKTKLAVLFIDLDNFKVI 1121

Query: 298  NDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIIS 357
            NDSLGH +GD+++K+   RLK  +     L  LGGDEF  +L +    +    +A RI+ 
Sbjct: 1122 NDSLGHDVGDQLLKQATERLKHCVRDSDTLARLGGDEFVAVLTDVSLEK-VNSVAARIVD 1180

Query: 358  LINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQM 417
             +   F ++  S  ++ SIG   +P DG D+  LL++ADTAMY AKERGRN+   F D+M
Sbjct: 1181 FLGASFSINDKSLFVSASIGISVFPDDGQDSLTLLKHADTAMYRAKERGRNQYQFFADEM 1240

Query: 418  NKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAF 477
               A  RL LE  L+ AL+     + YQP+V+     + GAEAL+RW+ P  G +SP  F
Sbjct: 1241 KVIALQRLTLETGLRLALETKSFRMCYQPQVDIHTGEVVGAEALLRWRDPTLGEVSPAHF 1300

Query: 478  IPVAEKAGLIEHLGRVVMREVFATVKRWKLQGILPGRVAINISPEQFGNPQLIDYLEKLL 537
            IP+AE  GLI  +G  V   V   +  W+ +G+   R+AIN+S  Q  +      +   L
Sbjct: 1301 IPIAESCGLIGAIGETVFTMVLEQIAYWREKGLTVPRIAINVSAHQLRDAGFAAKVGSWL 1360

Query: 538  RTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPI 597
             ++G+    I  ELTESA+M   +  ++ML +   +G  +SIDDFGTGYSSL+YL + PI
Sbjct: 1361 DSSGISSELIGIELTESALMERIDMVKEMLTSFDGMGMKVSIDDFGTGYSSLSYLKKLPI 1420

Query: 598  DELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQ 657
             ELKIDR+F+  I       ++ + II++ R+L + VVAEGVE+++Q  +L    C  +Q
Sbjct: 1421 HELKIDRSFVDGIALERDDRSIAKAIIDMSRALGMRVVAEGVESEEQLGVLKEEGCDMVQ 1480

Query: 658  GFHFYRP 664
            G+ F+RP
Sbjct: 1481 GYLFHRP 1487



 Score = 27.7 bits (60), Expect = 0.004
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 14   AKITSHSPFFFAILNDQHQYVMVNERYCDIAGLSSEEMVGMSDSQVLGEHFYRHLKPFYE 73
            AK+   +     I +     + VN+ +C I G S +E++G +   +      +H K FY+
Sbjct: 954  AKVFDRAGEAITITDSSGNIITVNDSFCRITGYSHQEVIGKNPRFLQSG---KHGKDFYD 1010