Pairwise Alignments

Query, 337 a.a., protease from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., 23S rRNA 5-hydroxycytidine synthase from Pseudomonas lactucae CFBP13502

 Score = 99.8 bits (247), Expect = 2e-25
 Identities = 88/302 (29%), Positives = 132/302 (43%), Gaps = 43/302 (14%)

Query: 1   MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVDYVHDHNKK 60
           +ELL PA ++   + AI  GADA+YIG      ARH A    S   + + V++   ++ +
Sbjct: 8   LELLSPARDVAIAREAILHGADAIYIG-GPSFGARHNACNEVSD--IAQLVEFARRYHVR 64

Query: 61  IHIALNTFAHPNGFERWTNAVDQAADLGVDALIIADIAVLEYAARHYPHLELHLSVQASA 120
           +   +NT  H N  E     + Q  D GVDALI+ D+ V+E      P +ELH S Q   
Sbjct: 65  VFTTINTILHDNELEPARKLIHQLYDAGVDALIVQDLGVMEL---DIPPIELHASTQTDI 121

Query: 121 TNVKAVEFYHQNFNVKRVVLPRVLSIHQVKQLSRNIPQGVELEVFAFGSLCIMSEGRCYL 180
             +   +F  Q     ++VL R L++ +++ ++      +E   F  G+LC+   G+C +
Sbjct: 122 RTLGRAKFLDQ-AGFSQLVLARELNLQEIRAIADETDAAIEF--FIHGALCVAFSGQCNI 178

Query: 181 SSYMTGESPNTVGACSPAKYVRWQETESGLESRLNEILIDKYAAGENAGYPTLCKGRFIT 240
           S    G S N  G CS A              RL   L D              +GR + 
Sbjct: 179 SHAQNGRSANR-GDCSQA-------------CRLPYTLKDD-------------QGRVVA 211

Query: 241 DIEGERKCYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDR 300
               E+      +   S N    L  L  A V S KIEGR +   YV+ +T  +R  +D 
Sbjct: 212 ---FEKHLLSMKDNNQSAN----LRALVEAGVRSFKIEGRYKDMGYVKNITAYYRQRLDE 264

Query: 301 YL 302
            L
Sbjct: 265 IL 266



 Score = 25.0 bits (53), Expect = 0.006
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 107 YPHLELHLSVQASATNVKAVEFYHQN 132
           YP  + HLS  A+  N KA +FYH++
Sbjct: 531 YP--DAHLSFLANVYNQKARDFYHRH 554