Pairwise Alignments

Query, 337 a.a., protease from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., putative collagenase from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  103 bits (258), Expect = 9e-27
 Identities = 90/299 (30%), Positives = 135/299 (45%), Gaps = 43/299 (14%)

Query: 1   MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVDYVHDHNKK 60
           +ELL PA +    + AI  GADAVYIG      ARH A  +   + +   V + H +  +
Sbjct: 8   LELLSPARDAAIAREAILHGADAVYIG-GPGFGARHNASNSL--RDIADLVPFAHRYGAR 64

Query: 61  IHIALNTFAHPNGFERWTNAVDQAADLGVDALIIADIAVLEYAARHYPHLELHLSVQASA 120
           I + LNT  H +  E     +    + GVDALI+ D+ +LE      P +ELH S Q   
Sbjct: 65  IFVTLNTILHDDELEPAQRLITDLYNTGVDALIVQDMGILEL---DIPPIELHASTQCDI 121

Query: 121 TNVKAVEFYHQNFNVKRVVLPRVLSIHQVKQLSRNIPQGVELEVFAFGSLCIMSEGRCYL 180
            +V+  +F   +    ++VL R L++ Q+  + +       +E F  G+LC+   G+CY+
Sbjct: 122 RSVEKAKFL-ADVGFSQIVLARELNLSQIAAIHQ--ATDATIEFFIHGALCVAYSGQCYI 178

Query: 181 SSYMTGESPNTVGACSPAKYVRWQETESGLESRLNEILIDKYAAGENAGYPTLCKGRFIT 240
           S   TG S N  G CS A              RL   L D              +GR ++
Sbjct: 179 SHAQTGRSANR-GDCSQA-------------CRLPYTLKDD-------------QGRVVS 211

Query: 241 DIEGERKCYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAID 299
             +      H L    +  T + L  L  A V S KIEGR +  +YV+ +T  +R  +D
Sbjct: 212 YEK------HLLSMKDNDQTAN-LGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLD 263



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 107 YPHLELHLSVQASATNVKAVEFYHQ 131
           YP  + HLS  A+  N KA EFYH+
Sbjct: 523 YP--QTHLSFLANVYNHKAREFYHR 545