Pairwise Alignments

Query, 337 a.a., protease from Vibrio cholerae E7946 ATCC 55056

Subject, 667 a.a., 23S rRNA 5-hydroxycytidine C2501 synthase from Escherichia coli ECRC100

 Score =  107 bits (267), Expect = 9e-28
 Identities = 92/299 (30%), Positives = 135/299 (45%), Gaps = 43/299 (14%)

Query: 1   MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVDYVHDHNKK 60
           +ELL PA +    + AI  GADAVYIG      ARH A  +   K + + V + H +  K
Sbjct: 22  LELLSPARDAAIAREAILHGADAVYIG-GPGFGARHNASNSL--KDIAELVPFAHRYGAK 78

Query: 61  IHIALNTFAHPNGFERWTNAVDQAADLGVDALIIADIAVLEYAARHYPHLELHLSVQASA 120
           I + LNT  H +  E     +      GVDALI+ D+ +LE      P +ELH S Q   
Sbjct: 79  IFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILEL---DIPPIELHASTQCDI 135

Query: 121 TNVKAVEFYHQNFNVKRVVLPRVLSIHQVKQLSRNIPQGVELEVFAFGSLCIMSEGRCYL 180
             V+  +F   +    ++VL R L++ Q++ + +       +E F  G+LC+   G+CY+
Sbjct: 136 RTVEKAKFL-SDVGFTQIVLARELNLDQIRAIHQ--ATDATIEFFIHGALCVAYSGQCYI 192

Query: 181 SSYMTGESPNTVGACSPAKYVRWQETESGLESRLNEILIDKYAAGENAGYPTLCKGRFIT 240
           S   TG S N  G CS A              RL   L D              +GR ++
Sbjct: 193 SHAQTGRSANR-GDCSQA-------------CRLPYTLKDD-------------QGRVVS 225

Query: 241 DIEGERKCYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAID 299
             +      H L    +  T + L  L  A V S KIEGR +  +YV+ +T  +R  +D
Sbjct: 226 YEK------HLLSMKDNDQTAN-LGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLD 277



 Score = 25.8 bits (55), Expect = 0.003
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 107 YPHLELHLSVQASATNVKAVEFYHQ 131
           YP  + HLS  A+  N KA EFYH+
Sbjct: 537 YP--QTHLSFLANVYNQKAREFYHR 559