Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., Multi antimicrobial extrusion protein MatE from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 97/448 (21%), Positives = 182/448 (40%), Gaps = 28/448 (6%)

Query: 3   NRSIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGIGM 62
           +RS +R+      P + + +   L  +VD   IGH   A  L  + V   +   +  +  
Sbjct: 10  HRSTHRRVWALATPMILSNISVPLVALVDSAVIGHLPHAHQLGAVAVGATLYTFLAWVMG 69

Query: 63  LVGVGTGALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGR 122
            + +GT   A+   G     + +RIL  GL+  + LA ++ VI    +   L        
Sbjct: 70  FLRMGTTGFAAQAAGRSDSAALRRILLQGLLLAVGLALLLGVIALPFSHLALTMMQPSAD 129

Query: 123 VFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWL 182
           + ++ L +    + G    L S A+        +      ++++    NI L+  F+  L
Sbjct: 130 LQQMTLDFFHTRLFGLPAALASYALVGWFLGAQNARAPLAILLVTNAVNIVLNLWFVMGL 189

Query: 183 QWELTGAAIATTLAQVVVTLLGLAYFFSARANM-----RLTRRCLRLEWHSLPKIFAIGV 237
            W + G+A A+ LA+    +LGL     AR  +     R+    LRL W +   + A+  
Sbjct: 190 DWGVVGSARASVLAEWTGVVLGL---LLARNTLRAWPGRIVWSALRL-WSNWRPLLAVNR 245

Query: 238 SSFFMYAYGSTMVALHNTLMIEYGNA-VMVGAYAVMGYIVTIYYLTVEGIANGMQPLASY 296
             F       +++ L        G+A V   A  + G ++T + L  +G+A+ ++ L  +
Sbjct: 246 DIFLRTLALQSVMFLITVQGARLGDATVAANALLLNGLLLTAHAL--DGLAHAVEALCGH 303

Query: 297 HFGARNYDHIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGIK- 355
             GAR+ D +R+ L +A G +++  + F L   L   Q      +   E+ A A M +  
Sbjct: 304 AIGARDRDTLRRSLVVAGGWSLISSVVFALFF-LVAGQGFVSLQTDIPEVRATAMMYLPY 362

Query: 356 ------LHLFAMYLDGFLVVSAAYYQSTNRGGKAMFITVGNMSIMLPFLFILPQFFGLTG 409
                 L +++  LDG  + +    +  N    AM  +   ++     L  L    G   
Sbjct: 363 LALMPLLAVWSYLLDGLFIGATRAREMRN----AMLFSAAGIAP----LAYLASSHGNHA 414

Query: 410 VWIALPISNIVLSTVVGIMLWRDVNKMG 437
           +W+      ++    +G + WR   + G
Sbjct: 415 LWLTFLAFTLLRGLSLGTIAWRLTRRDG 442